Genie ExamplesΒΆ
- PedGenie Examples
This example analyses each marker as a single locus.
Single Locus GeneCountAllele Example
Similar to the Single Locus Example, but the allele frequency estimation method GeneCounter from GeneCountAlleles program is used.
This example examines the joint inheritance of two or more markers, without considering phase of the data.
This example examines the joint inheritance of two or more markers, using phased data.
Example of CMH / meta test statistics for multiple studies.
This is a PedGenie - QTDT Interface example.
This example is similar to the Single Locus Example, but all founders are assigned with unique alleles, and gene-drop to the rest of the pedigree for use in the weighting algorithm.
- hapMC Examples
This example examines the joint inheritance of two or more markers, with GCHap phased data method.
This example examines the joint inheritance of two or more markers, with GCHap phased data method.
- hapConstructor Example
Single Gene hapConstructor 1.0 Example
This example examine the contruction of haplotype analyses of a two loci using unphased data.
Gene-Gene hapConstructor 2.0 Example
This example examine the contruction of haplotype analyses of a two loci using unphased data.
QTDT Example
This example demonstrates Genie and QTDT Interface with phased data.