hapMC ExampleΒΆ
Analysis example
The hapMC example allows a user to test simulated multi-marker data. View, Source or click on Page, View Source to view the file.
Files required :
hapmc_asp.dat - Linkage pre-makeped pedigree file with a header linehapmc_asp.rgen - .rgen Parameter File
Output files :
To run this analysis:
java -jar hapmc.jar hapMC hapmc_asp.rgen
GenotypeData.datThe example Genotype Data file is composed of 500 affected sib-pairs. Each individual has full genotype data for 10 markers.
Output pedigree phase configurations to file
HapMC example for writing pedigree configurations to file.
Files required :
asp.example.dat - Linkage pre-makeped pedigree file with a header lineasp.example.rgen - .rgen Parameter File
Output files :
To run this analysis:
java -jar hapmc.jar hapMC asp.example.rgen